[BUGFIX] Use correct versioned pid/t3ver_state in various functional tests

This change adapts leftover XML fixtures to use real PIDs instead
of pid=-1.

By this, some drive-by fixes within Extbase:

* Extbase count() queries now respect workspaces
* Extbase's QueryParser now filters out workspace overlays in ANY case

Resolves: #96176
Releases: main, 11.5
Change-Id: Ie249bf13bf27a263ceb9f9561840b570765dd157
Reviewed-on: https://review.typo3.org/c/Packages/TYPO3.CMS/+/72415


Tested-by: core-ci <typo3@b13.com>
Tested-by: Benni Mack <benni@typo3.org>
Reviewed-by: Benni Mack <benni@typo3.org>