[BUGFIX] Add pid column to extension manager tables

Extbase relies on the pid column to exist for all
persistent domain models.

Add this column and at the same time ignore it
in created queries.

Change-Id: I2b23f44685b7a6712663458b6a776ec7870cf802
Resolves: #41917
Releases: 6.0
Reviewed-on: http://review.typo3.org/15520
Reviewed-by: Oliver Hader
Reviewed-by: Helmut Hummel
Tested-by: Helmut Hummel